rs32802004 SNP Detail

Summary

• ID
  rs32802004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185046016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGACAG ACCGTGCAGC
  TGTGTATGTC TGTCATTCTG TAGGCCAATA TTCTGTATGT CACTGCTACT TAAAATCCGG
  ACATCGGCAA ACACCCTCTG AGCGCTGTGC AGCAGATCAC GGGAGAGTCT GTAGCATGGC
  AGGAGAATGT GCTGACAAAA TAAAATGAGT GCTTCTGTGT ACCTGAGAAA GCTGACGTCT
  R
  TTTCATCTCA CTCACCGACT GCTCAATCTG TGTACATTTT CACTTTGAAA ACAATTGTCA
  GTTCCACCAG TCTGCTGAAG TCTGAGGGTG TAGCTCAGTG GTAGAGTGTG TGTTGCTGAA
  AATTTGGGGT ATGTCACAGT GGTCGAGTTT GTGTTGGTGA AGTGTGGGGA TACAGCTCAG
  TGGTGGAATG TGAGTTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730359	NES10646053	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	G	A	A	A	G		G	A	G	A		A
ss146427402	ENSMUSSNP793594	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					A
ss320174689	CHEV_1_187137698	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32802004					SNP	G	A	G	A	G	A	A	A	G	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730359	NES10646053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185046016 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	20 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	Intron
Mir194-1	microRNA 194-1	434 bp downstream
Mir215	microRNA 215	127 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	127 bp distal
Rr425363	regulatory region 425363	1622 bp distal
Tssr10600	transcription start site region 10600	1619 bp downstream
Tssr10601	transcription start site region 10601	145 bp downstream