rs32804448 SNP Detail

Summary

• ID
  rs32804448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185047197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAGTCA GTGGTCAGGA
  ATGCACAGGG CCTTGATATA ATTCCTAGCA CAAAATTATT AAAGATAACA ACAAACCTAT
  CCTTTGTGTG GTCATACGTG ACTTTTTAAA AAAACAACAA CTTAAATTAA CATTTTTTAA
  AACTTCTAAA ATCCATACAC TCAGAATGAT ACTATTAACA CATACAATCA CAGCAACAGT
  R
  AAAACCAAAT CATCTCAACA ACGCCAAGGA ATCCCCAGGA AGGGCCGCCA GTCTGGGCCT
  ACAGTCTCTC AACCAACAAA CAACCCATCA CTTATTGCCT CTGCCCCTCG AAACTGCTGA
  CTAGATCCTG AACTAACAAA ATCACACTCA GCCAATGTCG CTGATGCTAT AGCATAGTTG
  AGTAAAATCT CATTAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730398	NES10645941	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	A	G	G	A		A		G	A	G		G
ss146427467	ENSMUSSNP3713518	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G					A
ss320174706	CHEV_1_187138879	CHEVERUD	SCREENING_POP	f	SNP												A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32804448					SNP	A	A	G	A	G	A	G	A	G	G	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730398	NES10645941	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185047197 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	1201 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1615 bp downstream
Mir215	microRNA 215	1308 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1308 bp distal
Tssr10601	transcription start site region 10601	1326 bp downstream