rs32805084 SNP Detail

Summary

• ID
  rs32805084
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185047377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAATCA CAGCAACAGT
  GAAAACCAAA TCATCTCAAC AACGCCAAGG AATCCCCAGG AAGGGCCGCC AGTCTGGGCC
  TACAGTCTCT CAACCAACAA ACAACCCATC ACTTATTGCC TCTGCCCCTC GAAACTGCTG
  ACTAGATCCT GAACTAACAA AATCACACTC AGCCAATGTC GCTGATGCTA TAGCATAGTT
  K
  AGTAAAATCT CATTAACCAA AATAAAGTCA AAGCAGTCTT AGGAAATGAA AACTTACAAT
  GAATTCTTAC AGAAATGATT AGCTGTCCCC TTTCCACATC TATCAAAACA GCAACTAGGA
  GCTGGGTATG GTGGCACAGG CTTTAATCCC AGGGGGTGCA CAAGAAAGAG AGAGAGAGAA
  AGAGAGAGAG AGGAAGGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730404	NES10645945	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G	T	G	G	T		T		T	G		G
ss146427473	ENSMUSSNP2103033	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G											T
ss320174708	CHEV_1_187139059	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32805084					SNP	T	T	G	T	G	T	G	T	G	G	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730404	NES10645945	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185047377 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	1381 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	1795 bp downstream
Mir215	microRNA 215	1488 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1488 bp distal
Tssr10601	transcription start site region 10601	1506 bp downstream