rs32805174 SNP Detail

Summary

• ID
  rs32805174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58779267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTCATC CAGAGTTTTG
  GCCCATGTAG GAAAACCATA GAGAAGTGAC ATTTTTGAAT TCTCCTTATC AGGTTAAAAA
  CTCACCAGCC ACCTGGTGGT CCCCTGGAAG AGGGCTACGA CTGTCACCTG CATGTCATGG
  TTTTTCTACA TAGTCCTGGA ATAACAGGGC TCTTGAGTTT CCCTTTGGGT CAGGCTCTTC
  Y
  GTGTGAGGTT GGAACTTTGG ACTGAGTCTA GCTGGAGAAA GAATAGGAAG CTAAAGAAAC
  GGGCAAACAA AACGTCATGA TAAAAAGAAC TCAGCCAGCC TGGGTGTGGG CTTAGTTCTA
  CTTTGTAAAT GACTCTCTCT CTCCCATCCC TCAGGAACAC TGGTGAAGAC ATCCATCCAG
  GAATCAGGAG CTTTTTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49402285	NES12770878	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32805174					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402285	NES12770878	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58779267 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411493	regulatory region 411493	123 bp distal
Tssr6810	transcription start site region 6810	1656 bp downstream
Tssr6811	transcription start site region 6811	1435 bp downstream
Tssr6812	transcription start site region 6812	1111 bp downstream