rs32805179 SNP Detail

Summary

• ID
  rs32805179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58778749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAAGCTT AGTGTGGTAG
  CACAGGATGG TAACCCCAGC ACTCATTAGT GGAGGCAGGA GAACAGGTTG GAGGCTAGCC
  TAGGCTACAT ATCAAGAGCC CACCTCTGAA ACAAAATCAA ACAACCCAAT TCATTTCCCC
  AAATGTTTCA GATGCTGGTA AGGCCCCCCT GCCCCCTCTA TCTTTAGACA CCATTTCTCA
  Y
  TTCGCAGCAG TCTTGGCCCA GAGACGGAAT GAGCTAATGA GATGACAGCT CTTCAGCACT
  GAGGTGTGAG CCAGCCCTTT TGTGGCTTCG GAACCCAGTG CTTCTCCCAC TTGTGCGGGC
  TAAAGTGAGT CATTGTTGTG GGGCAGAATT TGCTGTGGGC TCCAGCACTT GCCAGGCTTG
  CTGAGCTATG TCTTGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49402293	NES12770872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32805179					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402293	NES12770872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58778749 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411493	regulatory region 411493	within coordinates
Tssr6810	transcription start site region 6810	1138 bp downstream
Tssr6811	transcription start site region 6811	917 bp downstream
Tssr6812	transcription start site region 6812	593 bp downstream