rs32805894 SNP Detail

Summary

• ID
  rs32805894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185047705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGGCAC AGGCTTTAAT
  CCCAGGGGGT GCACAAGAAA GAGAGAGAGA GAAAGAGAGA GAGAGGAAGG GAGGGAACAC
  AAACAACAAA ACCTTAACAG CAACAACGTA GAAACTGCAA ACTCCAACAG CATCCTCATG
  GTCATGGGGT TGAGGGAACA TCAGCCCTCT GAATGCCTCA CTCGCTCGCT GTCACACTGC
  K
  GACTTAGCCT TAACCCCGTG CTCCTGTCTC AGGCTTGCTC ACTGCTGGCT CATCCAGCCC
  AGCAACAGTG TGACTTTCTA CTCCCAGCAC TGGGGAGGCT GAGGCAGGAG GACTGCCGTG
  AATGTGAGAC TGTGCCAGAG CAGCCAGTGC TCACTGGTGA GACAGACAGA GCTGAGAGCG
  AGGAGGACAT CGGGACAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46730416	NES10645949	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G	G	G	T		G	T	G		G
ss146427479	ENSMUSSNP3932577	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					G
ss320174712	CHEV_1_187139387	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32805894					SNP	T	T	G	T	G	T	G	G	G	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730416	NES10645949	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185047705 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	1709 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir215	microRNA 215	1816 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1816 bp distal
Tssr10601	transcription start site region 10601	1834 bp downstream