rs32805897 SNP Detail

Summary

• ID
  rs32805897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185047708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCACAGG CTTTAATCCC
  AGGGGGTGCA CAAGAAAGAG AGAGAGAGAA AGAGAGAGAG AGGAAGGGAG GGAACACAAA
  CAACAAAACC TTAACAGCAA CAACGTAGAA ACTGCAAACT CCAACAGCAT CCTCATGGTC
  ATGGGGTTGA GGGAACATCA GCCCTCTGAA TGCCTCACTC GCTCGCTGTC ACACTGCGGA
  Y
  TTAGCCTTAA CCCCGTGCTC CTGTCTCAGG CTTGCTCACT GCTGGCTCAT CCAGCCCAGC
  AACAGTGTGA CTTTCTACTC CCAGCACTGG GGAGGCTGAG GCAGGAGGAC TGCCGTGAAT
  GTGAGACTGT GCCAGAGCAG CCAGTGCTCA CTGGTGAGAC AGACAGAGCT GAGAGCGAGG
  AGGACATCGG GACAAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46730419	NES10645950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32805897					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46730419	NES10645950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185047708 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	1712 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir215	microRNA 215	1819 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	1819 bp distal
Tssr10601	transcription start site region 10601	1837 bp downstream