rs32806123 SNP Detail

Summary

• ID
  rs32806123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73969680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGATTGGTT GAGTCCTTAC TGGCAGGGAG
  ACTGGGAGGG AGAAGATGAG TTGTAGCCCA TCCTCTATTT ATCTCCAGCA GTACTGGCTC
  CTGGGTGGGC AGAGACAGCT CCCACCCTGC TAGGGAGCTC ACCCTCTCTT GTTCATCTGC
  R
  CTTTTCAGTC ACCTACTGGA ACAAACCACG GGCTTCTGCC AAGATCTCAA CCCACACATT
  AGGTAAGCAC CGCACTCTAC GCTAAATTCT CTTTTTTAAA AGCCCATATT CTGCCAACAG
  GAAGCTAAGA GAAAGCCCAC AGTCGGAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45196471	mCV22554868	ABI	CRAMUS_MOUSE	f	SNP	G	G					A
ss51276622	NES14517786	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G		G	A	G		A
ss144680540	ENSMUSSNP2456509	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss319792984	CHEV_1_73977095	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32806123					SNP	G	G	A	G	G	G	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276622	NES14517786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73969680 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	1784 bp upstream
Tns1	tensin 1	within coordinates
Tssr12216	transcription start site region 12216	1992 bp upstream
Tssr12217	transcription start site region 12217	1163 bp upstream
Tssr12218	transcription start site region 12218	195 bp downstream
Tssr12219	transcription start site region 12219	264 bp downstream
Tssr12220	transcription start site region 12220	288 bp downstream