rs32806197 SNP Detail

Summary

• ID
  rs32806197
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58777554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACTGCT TTGTACAATG
  GAAATGCTAT AGCCTTTATA CTTATTTTTT AGGGGACAGT GACAAGAAGT GTTTATGTAC
  GTTATTCTGT ATTAAGTCCA TGTTATTTAA TCATCCATTT TAATATACAT ATGTTGCATG
  GGTGTGTCAA ATGCATAACA GTTACTCTTA GCCTTTTAAA CATTGTAAAG TATGTAATCA
  S
  ATGTATCACT GTTGACGTAA TCAATTTTAT GTTTGGGCGT TTAGGTTTTT CCTAGCCTGG
  GCCAGTGTAA GCAGTTGGTC GATAGATGTT TTTGAAACAC ATTTTTCTAA ATTTAGGATT
  TATTGTTTCC TTAAAACTGT AAAAGTGCTG GATGGTGGTA GCACACGCCT TTAATCCCAA
  CACTCAGGGG CCAGAGGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49402301	NES12771000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32806197					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402301	NES12771000	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58777554 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Cpgi285	CpG island 285	1221 bp distal
Rr411493	regulatory region 411493	880 bp proximal
Tssr6810	transcription start site region 6810	37 bp upstream
Tssr6811	transcription start site region 6811	257 bp upstream
Tssr6812	transcription start site region 6812	579 bp upstream