rs32806601 SNP Detail

Summary

• ID
  rs32806601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58626529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTAAT GGTCATCTCA
  GTTTTTAAAT GAGGGAAATT TGAGATACAC CCTTGAAAAT CCCTGATAAA CTGTAAAATT
  ATATGTAATG GATGTAACAT TCTTCTTCCT TAGGGAAAGC AAGTCAACAT TTCCCCAGTG
  CTAGATAGAA CAAGCCATCG TTAGTGAAGG TTGATCATCA CCAAACTTTT GAGTTCACTT
  M
  TGACATAGGC AGATAGCATT TAAATTTTCC ATAATTATGT GTTCATTCAT GGTTGAATCC
  TTTTTTTTTT CTGTTCTTAA ACGGACAGTT CTAAAGGTGA AATAATTTCC TGTTGTTGAG
  CCCTCAGTGC AGTAGAACTC GCTCATTCTG TGGAAGAGGA GAGAACCAGT TGGATTAGGT
  TGCCCTCTGA CCTCTGCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49402919	NES12776463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32806601					SNP	C	C	C	C	C	A	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402919	NES12776463	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58626529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	573 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	1047 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	Intron
Rr411457	regulatory region 411457	1190 bp distal
Rr411458	regulatory region 411458	976 bp distal
Rr411459	regulatory region 411459	1151 bp distal
Rr411460	regulatory region 411460	346 bp distal
Tssr93	transcription start site region 93	729 bp downstream
Tssr6781	transcription start site region 6781	969 bp downstream
Tssr6782	transcription start site region 6782	924 bp downstream
Tssr6783	transcription start site region 6783	745 bp downstream
Tssr11786	transcription start site region 11786	1052 bp upstream