rs32806666 SNP Detail

Summary

• ID
  rs32806666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191309955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CTCTGTGCAC ACCTGGCTTT
  R
  AGAGGATGGG TGGGAGTGGG GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45196868	mCV23578459	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G	G
ss146508229	ENSMUSSNP5580041	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32806666					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191309955 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1224	CpG island 1224			1538 bp distal
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr396728	regulatory region 396728			1664 bp downstream
Rr426187	regulatory region 426187			619 bp distal
Rr426188	regulatory region 426188			1833 bp distal
Rr426189	regulatory region 426189			1666 bp distal
Rr426190	regulatory region 426190			1741 bp proximal