rs32807596 SNP Detail

Summary

• ID
  rs32807596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135253173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CCGATAGTGT GAACCTCTGC
  Y
  CTTAGTTTGC CTTGTAAGCA GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45197133	mCV23633444	ABI	CRAMUS_MOUSE	f	SNP	T				C		T
ss51380630	NES14469652	PERLEGEN	MM_PANEL2	f	SNP		T	C	T		C	T	T		C	T	C		T
ss145530768	ENSMUSSNP4838499	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
ss319989135	CHEV_1_137222012	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32807596					SNP	T	T	C	T	C	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380630	NES14469652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135253173 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	769 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr12584	regulatory region 12584	573 bp distal
Rr28593	regulatory region 28593	within coordinates
Tssr8958	transcription start site region 8958	615 bp downstream
Tssr8959	transcription start site region 8959	579 bp downstream