rs32807835 SNP Detail

Summary

• ID
  rs32807835
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58623911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAGGC AAATATTTGT
  TTTCAATATG TAAACACCGT ATTTTTTGTA TGTAAAGCAC TATAGAATTT CACCTAAAGC
  AAAATGTAAG CTTTCTTTGT GACCAAAATA CCATTATTCT TGTAAAAAGA TAAAAGACAA
  GCAATAAAAC ACCAGTATCA TTTAAATTTT TTTATTTAAA GCACTGACAA ATACCTCAGT
  K
  TGCTGGACAT TTCAAAACAA ATACTAATGA CCCATTTCTA CTCAAACAAT ATTTTGAGAG
  AAAAATTCTA GCTTTATATG TATATGCATA AATGTTTATG TATATGTATG TTTATGTTAT
  GTATATGTAT AAATATTTAT GTATAAATGA TCAATAGTAG AAAAAGATTA CATCTTAGAA
  AGTTTTTCTA ACATGTAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49402929	NES12776448	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32807835					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402929	NES12776448	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58623911 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi281	CpG island 281			1056 bp proximal
D1Mit324	DNA segment, Chr 1, Massachusetts Institute of Technology 324			890 bp distal
Hycc2	hyccin PI4KA lipid kinase complex subunit 2			Intron
				Noncoding-Transcript-Variant
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3			1645 bp upstream
Rr411456	regulatory region 411456			289 bp distal
Rr411457	regulatory region 411457			728 bp proximal
Rr411458	regulatory region 411458			1429 bp proximal
Rr411459	regulatory region 411459			1446 bp proximal
Rr411460	regulatory region 411460			1643 bp proximal
Tssr93	transcription start site region 93			1876 bp upstream
Tssr6781	transcription start site region 6781			1629 bp upstream
Tssr6782	transcription start site region 6782			1653 bp upstream
Tssr6783	transcription start site region 6783			1839 bp upstream
Tssr11786	transcription start site region 11786			1488 bp downstream