rs32808594 SNP Detail

Summary

• ID
  rs32808594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86171093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGGCC TCATGGGGAA
  CTAAGGTTCA TGCTCAGGGG GTCTTGGGCA GACGAGCTAA GATTAGGCGG GGACACAAGA
  TGACAGCTCT CACCTGAACC ATGTGGTATC AGTAACAGTG TCAGCAACTG CTTTTTTTTT
  CTTTCTAACT AAAATGATTA GTTAGAAATT TAAATTTACA TTTCTGTGAC TAAGTTTAAA
  Y
  ATGTTTTCAT TGAATTGTTC TACTATATCC TTTGCCCATA CTTATTTAAT TATTGGTTTT
  TAAAAGTAAT CATGTTTTAG AAACTTGATT AAAGAGATTG GTCCCTTTTC TCTGACATCA
  TCAACAAGTT GACTGCTCCT TCTTGGAGAT GCTATGGACT AGAAATGCTT CATATTTTAG
  GGATCTTATT ATTAGCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss46731671	NES10758012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs32808594					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731671	NES10758012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86171093 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	211 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	329 bp downstream