rs32808599 SNP Detail

Summary

• ID
  rs32808599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86171340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTATTGG TTTTTAAAAG
  TAATCATGTT TTAGAAACTT GATTAAAGAG ATTGGTCCCT TTTCTCTGAC ATCATCAACA
  AGTTGACTGC TCCTTCTTGG AGATGCTATG GACTAGAAAT GCTTCATATT TTAGGGATCT
  TATTATTAGC AATTGCCACA GCAGAGAAAT ATTTTATTGC TTATGGTTTT ATAATTGTTG
  R
  TAGATTACAG GATAAGTAAA CACATTTGAG GAATAAATCT AGTTGGAATC TGTCATAGTT
  TAAAACATGA ATAAGAGAAA CCTTTTCTTA CAGAGAGTCT CTCTAAAACC CAGAACCTCT
  CCTAGCTTGC TTCCTAAGAC TTAAAAATTT ATAATGTAAG ATGTCAGCAC CTCTTAATTT
  TAGTTTTCCT AAGATGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46731680	NES10758015	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32808599					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731680	NES10758015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86171340 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	458 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	576 bp downstream