rs32809139 SNP Detail

Summary

• ID
  rs32809139
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86182552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTGAGT TTCTGGGTTT
  GTCCCAGGAG TGGTCTCAGA AGTACTATAC CCTGCTCTCA GGCATGGTCT GACACCCCCA
  TACCCCAGGT CCTGCTAGGC GCTGGACTGA TAATCATCTT AGTCCAACTC TAAGTCTGAG
  CCCCCTGGTG CTGGATTGAT GGCCCCTTAG GCTTGCCTTT TTCAGAGAGT GTTAGGCTAC
  W
  AATTATTCAG ACTCACAGAT CAGAACACTG AGAGTAGACA TAACCTCTCT TCTTTCTGCC
  GCTAACTGAC GCACATGTGA CACAGCAGCT ACACCTGCAA TGCCTTCATA TTGCCATTGT
  TAATAGAATT GTATTTGTAT GTGTCTTGTA ACCTGACCTT TCTGGAACAT CACTTTCTTT
  TCTTTTTTTA GTCTTCTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46731749	NES10757561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32809139					SNP	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731749	NES10757561	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86182552 () rs orientation: forward

Symbol	Name	Function Class
Gm26343	predicted gene, 26343	within coordinates
Lrba	LPS-responsive beige-like anchor	within coordinates