rs32809142 SNP Detail

Summary

• ID
  rs32809142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86182622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACCCCCA TACCCCAGGT
  CCTGCTAGGC GCTGGACTGA TAATCATCTT AGTCCAACTC TAAGTCTGAG CCCCCTGGTG
  CTGGATTGAT GGCCCCTTAG GCTTGCCTTT TTCAGAGAGT GTTAGGCTAC TAATTATTCA
  GACTCACAGA TCAGAACACT GAGAGTAGAC ATAACCTCTC TTCTTTCTGC CGCTAACTGA
  Y
  GCACATGTGA CACAGCAGCT ACACCTGCAA TGCCTTCATA TTGCCATTGT TAATAGAATT
  GTATTTGTAT GTGTCTTGTA ACCTGACCTT TCTGGAACAT CACTTTCTTT TCTTTTTTTA
  GTCTTCTAGA TGCTAATGTG TTTTATTTAT GTGTTTTTTC TTCCATTAGT TTTTTTATTT
  ATTCACTTTA TATCGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46731752	NES10757562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32809142					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731752	NES10757562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86182622 () rs orientation: forward

Symbol	Name	Function Class
Gm26343	predicted gene, 26343	within coordinates
Lrba	LPS-responsive beige-like anchor	within coordinates