rs32809492 SNP Detail

Summary

• ID
  rs32809492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46320376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGGCAG CAAACACATA
  GAGACTCTGC ATCAAACGGG GAGTGGGGGT GCATGAGCAC CCCAGGTTGT CCCCTTCATA
  TGTTCTGTGA TATGTGCATT CCTACACACA CACACACACA CACACACACA CACACACCAT
  ACATACCTAT ACATACTCAT AAATACATAC ATAAAATGAA GGCCAAATAA CTGATAGGAC
  Y
  TATGTTTAAG TATATGCAGA TGTGTTAGGC AGGACTATGT TTAAGTGCAT GCAGATATGC
  CGGGCATGAT GCCTGTAATC TCCACACAGG GAAGGCAGAA ACAGAGGACT GTGAGTTCGA
  GGCCAGGCTG GTCTCCACAG TGAAACCCTG CCTCAAAAAC AAATGCTTTC ATCTCCCAGC
  ATTTTTGAAG AATGACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215743	NES11785068	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32809492					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215743	NES11785068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46320376 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	1346 bp downstream
Tssr72531	transcription start site region 72531	1432 bp downstream
Tssr72532	transcription start site region 72532	1547 bp downstream
Tssr72533	transcription start site region 72533	1559 bp downstream
Tssr72534	transcription start site region 72534	1575 bp downstream
Tssr72535	transcription start site region 72535	1602 bp downstream