rs32810556 SNP Detail

Summary

• ID
  rs32810556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATGAG GTTGCTGACA
  GATGGCAAAT GGAAACGGAT CAGAGTGGAT AGGCTGCGAG GGTGAGGGAG GATTTTAAAG
  ACTGTTGTTT CTTAAAGGTA AGGCAGACTA GAGATGGAAC AACCAACCCA CTTAGAGGAG
  AAAGATAAGG GGGATGAGGA AGGCAGAGGA GGGGCTGCCC TCATCAGCTC TAATAGGTCT
  R
  TTGGAAAGTC CCCTGGCTTC CTGGCTGTGT AAATCAGATT ATCTGAAGAT CCCTGAAGAG
  TGTCAGAGCT TTCAGGCAAG TGGCACTGAT AGACATGGAG ACTTGTGGCT TGGAGGCAAG
  GCAGAGTGTG ACAGAGGCAC AGAGAGGGAA TTTGGAATAA GCACGGAAGC GTGGGTTAGG
  GCTGTGGGGA ACATGGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215757	NES11785012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32810556					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215757	NES11785012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321260 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	Intron
Tssr72530	transcription start site region 72530	462 bp downstream
Tssr72531	transcription start site region 72531	548 bp downstream
Tssr72532	transcription start site region 72532	663 bp downstream
Tssr72533	transcription start site region 72533	675 bp downstream
Tssr72534	transcription start site region 72534	691 bp downstream
Tssr72535	transcription start site region 72535	718 bp downstream