rs32810560 SNP Detail

Summary

• ID
  rs32810560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46321472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTTCC TGGCTGTGTA
  AATCAGATTA TCTGAAGATC CCTGAAGAGT GTCAGAGCTT TCAGGCAAGT GGCACTGATA
  GACATGGAGA CTTGTGGCTT GGAGGCAAGG CAGAGTGTGA CAGAGGCACA GAGAGGGAAT
  TTGGAATAAG CACGGAAGCG TGGGTTAGGG CTGTGGGGAA CATGGTCCTT AGCATCCTTG
  Y
  TTATCCCAGC TTCTTGTGGC AGTGTTTCTT TTTAAATTTT AATTAATGAA TTCACTTACT
  TACTTTTACA TCCAGACTGC GGTTTTTCGT CCTTCCTCTC CTCTCAGTCC TTCCTCCACG
  CCTTCTCTCT CCTCCATGCA TTCCTCTCCC CTTTCTCTTC AGAAAAGGGG AGGCCCGTGG
  ACATACTTCT AATGTTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215761	NES11785014	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	C	T	T
ss149177887	ENSMUSSNP1664549	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32810560					SNP	T	C	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215761	NES11785014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46321472 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	within coordinates
Tssr72530	transcription start site region 72530	250 bp downstream
Tssr72531	transcription start site region 72531	336 bp downstream
Tssr72532	transcription start site region 72532	451 bp downstream
Tssr72533	transcription start site region 72533	463 bp downstream
Tssr72534	transcription start site region 72534	479 bp downstream
Tssr72535	transcription start site region 72535	506 bp downstream