rs32811226 SNP Detail

Summary

• ID
  rs32811226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46322255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAACCT CATGAGAAAT
  GTCATAGTGA ATACTTTGAT GAGGAAATAG TAGCTAACTA GCCTGGAACC AAGGGAGAGA
  GCCAAATATT GAAAATGCCA CACAAAGACC ACTCTTGTCT CTATCGCAAT TTTAAAACTA
  TCTTTTATTC TCTGACAATT TTATATACAG ACACAATGTC TCTCAATCGT ATCCAGCCTG
  Y
  ATCCCTGTCT CACTGGTCTT GACTCCCTCC AACACCAGCT CCTCTGGGGT ACAGCATTGC
  TGAGCTTATT TCACACCAAG ATGAGCTTCA TCCTGGAAAG GTAAGAGTGA TGTACCCCTA
  ATGAAAACGA ACTGTGCAAC CATTCCAGGG AATGTCAGTA GCACGTTCAG TAAAATTTAA
  CACGTATTTT GGGGGAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215767	NES11784943	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	T	C	T	C	C
ss149177923	ENSMUSSNP4274414	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32811226					SNP	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215767	NES11784943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46322255 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	294 bp upstream
Tssr72530	transcription start site region 72530	520 bp upstream
Tssr72531	transcription start site region 72531	433 bp upstream
Tssr72532	transcription start site region 72532	325 bp upstream
Tssr72533	transcription start site region 72533	307 bp upstream
Tssr72534	transcription start site region 72534	290 bp upstream
Tssr72535	transcription start site region 72535	272 bp upstream