rs32811228 SNP Detail

Summary

• ID
  rs32811228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46322326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGAGAG CCAAATATTG
  AAAATGCCAC ACAAAGACCA CTCTTGTCTC TATCGCAATT TTAAAACTAT CTTTTATTCT
  CTGACAATTT TATATACAGA CACAATGTCT CTCAATCGTA TCCAGCCTGC ATCCCTGTCT
  CACTGGTCTT GACTCCCTCC AACACCAGCT CCTCTGGGGT ACAGCATTGC TGAGCTTATT
  Y
  CACACCAAGA TGAGCTTCAT CCTGGAAAGG TAAGAGTGAT GTACCCCTAA TGAAAACGAA
  CTGTGCAACC ATTCCAGGGA ATGTCAGTAG CACGTTCAGT AAAATTTAAC ACGTATTTTG
  GGGGAAAAAA ATAACAAAAA CAAAACAAAA CAAAAAAAAC TCCTTTGTAG ATTGGAGGGG
  AGAAGGAAAA CCTTTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48215769	NES11784946	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32811228					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215769	NES11784946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46322326 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	365 bp upstream
Tssr72530	transcription start site region 72530	591 bp upstream
Tssr72531	transcription start site region 72531	504 bp upstream
Tssr72532	transcription start site region 72532	396 bp upstream
Tssr72533	transcription start site region 72533	378 bp upstream
Tssr72534	transcription start site region 72534	361 bp upstream
Tssr72535	transcription start site region 72535	343 bp upstream