rs32811230 SNP Detail

Summary

• ID
  rs32811230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46322808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  TTCTTCCTCT GCTTTATTGC ATAGGAGGTG GGAAACATGC ACATATGATT TCCGGTGCAG
  GGTAGGGGGG AGAGAGTCTG AGTCACCTGT TTTATGGGTG TCCCATTTAA ATGTAAAAGA
  ACATGGAATT TCCCCCCATC TGATTAATAT GTGCTAAGGA TGGTGACGGC TATCTCCAGT
  R
  ACCCATTGTC CCTTTGTTAT GCTAGCCTCA GGAAGGTTTA TTTCTCACCC ATTCTTGTTC
  AGCAGCCTGT GAGTGACCCT CCAGGGCTGT TCTCCATGTG ATCTGTGTGG CTACTCGGAG
  ATTTGGGAAA TTTCTACCTT AGAGCTCTGC CATCTGAATC CAGTGGTCAC CAAACGGATA
  GAAATTTTGA GATGCAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215771	NES11784948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32811230					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215771	NES11784948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46322808 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	847 bp upstream
Tssr72530	transcription start site region 72530	1073 bp upstream
Tssr72531	transcription start site region 72531	986 bp upstream
Tssr72532	transcription start site region 72532	878 bp upstream
Tssr72533	transcription start site region 72533	860 bp upstream
Tssr72534	transcription start site region 72534	843 bp upstream
Tssr72535	transcription start site region 72535	825 bp upstream