rs32811233 SNP Detail

Summary

• ID
  rs32811233
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46322990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACGGCTA TCTCCAGTGA
  CCCATTGTCC CTTTGTTATG CTAGCCTCAG GAAGGTTTAT TTCTCACCCA TTCTTGTTCA
  GCAGCCTGTG AGTGACCCTC CAGGGCTGTT CTCCATGTGA TCTGTGTGGC TACTCGGAGA
  TTTGGGAAAT TTCTACCTTA GAGCTCTGCC ATCTGAATCC AGTGGTCACC AAACGGATAG
  W
  AATTTTGAGA TGCAATGCCA GGTTTTAAAT GCTTCGGGAC TCCCTCGCTA CACCTCCTCA
  CAGCACTCTT CCTTACTGTG AGAGATCTGT AAACCGTCTT CCCGTAAGCC AAGAAGAAGA
  TGTGAAGCAA CTGTGGAAGC GTCCAGAATC ATCTCCGCAA AGGTCTTTCT CGTATGCGCT
  CACAGCATAA GGACTCCGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48215775	NES11784955	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	A	A	T	A	T	T	T
ss149177932	ENSMUSSNP1983509	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32811233					SNP	A	T	A	A	A	A	A	T	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48215775	NES11784955	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46322990 () rs orientation: forward

Symbol	Name	Function Class
Tph1	tryptophan hydroxylase 1	1029 bp upstream
Tssr72530	transcription start site region 72530	1255 bp upstream
Tssr72531	transcription start site region 72531	1168 bp upstream
Tssr72532	transcription start site region 72532	1060 bp upstream
Tssr72533	transcription start site region 72533	1042 bp upstream
Tssr72534	transcription start site region 72534	1025 bp upstream
Tssr72535	transcription start site region 72535	1007 bp upstream