rs32811862 SNP Detail

Summary

• ID
  rs32811862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119008854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAGGTGGCG CTATTTAGGC GATCAGATGA GAACGGATGA GGCAGTGGTT TCCTCAATAT
  CGTCTGTGGG CTCTCCGGAT GGCATTGCTA TCTGTAATGT GTGTAGTTGG CTAAAACAAC
  CAAGCACCAG ACATGAAAGC ATTGTCACGA AGGCCCTTGG GGGGTGGGGG TGGGGGAGAA
  TCACATGCAG TGACCTTATG GCCAAGGCGC AGACAAGGGA GGAATTTTAG AAAGCATGTC
  AGTTTGAGTG GGTGAGGTGC TCATTCAACG AGGTGCCGCT GAATCCGCAG TGTGACCTTA
  R
  GAGTTTTAGC CAGGAGACAA ATGGAGACTC AAAGTCTGGG CAACTTGCTC TGAATAAAGA
  GCTGGGGTGT CAGCAGGCTA GTTCAGTTCC AGACTCTAGG GTCCTCCTTA CCGTCTGCTA
  GTTCTTGATT GACTTAGCTA TCTGCTCTTT GATACATACC AATCACTGTC TCATCATCCC
  AGGCCCTGTG CTGGCAGTTG AAATATTTCC CAAACCCACT GGCCTATTGC TCAGTGTCTC
  GCTGTGACAG ATGCCACGTG ATATATTGAT ACCAGTATTG AATGTAACTT ATACACATTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46195193	mCV24946713	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G	G
ss145802138	ENSMUSSNP4584369	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32811862					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119008854 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	1618 bp upstream
Cpgi21109	CpG island 21109	1446 bp proximal
Rr670996	regulatory region 670996	1278 bp proximal
Rr670997	regulatory region 670997	1629 bp proximal
Tssr79649	transcription start site region 79649	1473 bp upstream
Tssr79650	transcription start site region 79650	1492 bp upstream
Tssr79651	transcription start site region 79651	1508 bp upstream
Tssr79652	transcription start site region 79652	1538 bp upstream
Tssr79653	transcription start site region 79653	1604 bp upstream
Tssr79654	transcription start site region 79654	1629 bp upstream
Tssr79655	transcription start site region 79655	1674 bp upstream