rs32815764 SNP Detail

Summary

• ID
  rs32815764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA CTATAAAATT TACCAAAGCC
  Y
  GCCTTATAAT TAATGAAATA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45197844	mCV23614886	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss120007459	PARCsnp_1.17808	PARC_SEQ	INBRED	f	SNP		C	T
ss120010368	PARCsnp_1.07451	PARC_SEQ	INBRED	f	SNP		C	T
ss146184023	ENSMUSSNP1881280	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320123255	CHEV_1_174141509	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32815764					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038945 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1033 bp downstream
Tssr15168	transcription start site region 15168	1252 bp upstream
Tssr15169	transcription start site region 15169	1174 bp upstream
Tssr15170	transcription start site region 15170	1152 bp upstream
Tssr15171	transcription start site region 15171	1134 bp upstream
Tssr15172	transcription start site region 15172	1053 bp upstream
Tssr15173	transcription start site region 15173	959 bp upstream
Tssr15174	transcription start site region 15174	905 bp upstream
Tssr15175	transcription start site region 15175	605 bp downstream
Tssr15176	transcription start site region 15176	1686 bp downstream
Tssr15177	transcription start site region 15177	1740 bp downstream
Tssr15178	transcription start site region 15178	1764 bp downstream
Tssr15179	transcription start site region 15179	1786 bp downstream
Tssr15180	transcription start site region 15180	1991 bp downstream