rs32817019 SNP Detail

Summary

• ID
  rs32817019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76369174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC ACACATATGC ACACCCGGGC
  K
  CTTCCCGCTC TGCTTCCTGA AGCAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45698407	mCV25275873	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146590143	ENSMUSSNP3429099	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321170951	CHEV_4_76096841	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32817019					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76369174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	164 bp distal
Gm42303	predicted gene, 42303	within coordinates
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	within coordinates
Rr101141	regulatory region 101141	826 bp proximal
Tssr37647	transcription start site region 37647	26 bp downstream
Tssr37648	transcription start site region 37648	516 bp upstream
Tssr42162	transcription start site region 42162	1152 bp upstream
Tssr42163	transcription start site region 42163	441 bp upstream
Tssr42164	transcription start site region 42164	322 bp upstream