rs32817394 SNP Detail

Summary

• ID
  rs32817394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:85125403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAG AATTGTCTGT GATCTCCCTA
  Y
  TGGAAAGGTA GAGCCAAGTA TATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45698999	mCV22286187	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146897528	ENSMUSSNP1440589	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321193478	CHEV_4_84853070	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32817394					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85125403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	864 bp distal
Rr376767	regulatory region 376767	595 bp upstream
Rr594659	regulatory region 594659	1621 bp distal
Rr594660	regulatory region 594660	552 bp distal
Rr594661	regulatory region 594661	1484 bp distal
Rr594662	regulatory region 594662	546 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	Intron
Tssr37707	transcription start site region 37707	1974 bp downstream
Tssr37708	transcription start site region 37708	1938 bp downstream
Tssr37709	transcription start site region 37709	1671 bp downstream
Tssr37710	transcription start site region 37710	1650 bp downstream
Tssr37711	transcription start site region 37711	1644 bp downstream
Tssr37712	transcription start site region 37712	1481 bp downstream