rs32819646 SNP Detail

Summary

• ID
  rs32819646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61416828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAACTGCA AATCCAATTG
  TGCCAATGGT CCATTAAATG CCTCCAAACA TACTATTATG TGAAGCAGTC GACTGCATCT
  CCACTCAACT CGTCCACGCT TACATATAAA ATATACTTAA TGTGGCATGT GGGTAAACTG
  AATGGGCTTG ACGTGATCAG GGCTGAGGTC ACCAGGAGAC TAGCGCTGGA GGCCTAGGAG
  Y
  ATCTCAACAC CAGCCTTGCT GCAGCAGCGC AGAGGAGGAG AATGTGAGGA AAGGCGGAGC
  AGGTGCAGAG TCAGGTGGGG GCCACAGCCC CTATCCCCCT CCCCCATTGC AGGGCCTGGC
  AGGAAACGAG TCGATGCATG CGTTGGGGGA GTAGGGGAGT GGAGGGCCCA AGCGGCAGCT
  GCATTCAAGG CACAGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718126	NES11297796	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32819646					SNP	C	C	T	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718126	NES11297796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61416828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	116 bp proximal
Rr680558	regulatory region 680558	within coordinates
Rr680559	regulatory region 680559	188 bp proximal
Tssr85515	transcription start site region 85515	167 bp upstream