rs32819650 SNP Detail

Summary

• ID
  rs32819650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61417039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTGCT GCAGCAGCGC
  AGAGGAGGAG AATGTGAGGA AAGGCGGAGC AGGTGCAGAG TCAGGTGGGG GCCACAGCCC
  CTATCCCCCT CCCCCATTGC AGGGCCTGGC AGGAAACGAG TCGATGCATG CGTTGGGGGA
  GTAGGGGAGT GGAGGGCCCA AGCGGCAGCT GCATTCAAGG CACAGGGTGT TCTATACAGG
  Y
  CCAACCGGCT TCTGCGCCGG GCCTTCGCAT AGCTACAGAA CTCGAGGGAC AATCTCAATG
  TCCTCCACAT TCCGGTGCCT CTTGGGCGTC CCTCCTGGCC ACTGCCGGAT GCCATCGAAG
  GAAACTGCGC ATCCCACAAT TCACCGAGGT TTGTTTTCCC CTCCAACTCC AGATGGCCTA
  TCTGGGGACA GCAGAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718130	NES11297798	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	C	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32819650					SNP	T	T	C	T	T	T	C	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718130	NES11297798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61417039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	within coordinates
Rr680558	regulatory region 680558	24 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	24 bp downstream