rs32820549 SNP Detail

Summary

• ID
  rs32820549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46399404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCATTC CCTTCTCCTT
  CACTCTGGTC TCATTTGACC ATTAGGAATG ACTGGATATG TGACAGAAGT GGGGTACTGT
  GTTAGGTGAT CCACACAGAT AATTTGCCAA AAGTCTGCCT GGTTACTGTG TATGCCCCAT
  AGCTGCACTC ACCAGTGTAA AGAGGTCCTC TACAAGAGGA CTCACAAATG CCAACAGGAG
  R
  AGCCACTGGT CCACAAGAGG ACAGCATTCT CGGTTTCCTT CCGGCTCTCT AGCTCCTGTC
  TCACAGGGCT TTTTCCTTGT CTTTTTCCTC TCCTCTAAAA GCAAAACCTA GTCCTGCTGT
  ACTGAGTTAA CCACATACCC AGTAGTGCAG GGCTCCCCGT GCTCCCAGCT TGGCTGTTCA
  TGCTGTGGCT CCTCTTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48216949	NES11779655	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32820549					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216949	NES11779655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46399404 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	1203 bp proximal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	510 bp downstream
Rr646777	regulatory region 646777	1287 bp distal
Saa2	serum amyloid A 2	1853 bp upstream
Tssr66700	transcription start site region 66700	1852 bp upstream