rs32820674 SNP Detail

Summary

• ID
  rs32820674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61417392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCCCCT CCAACTCCAG
  ATGGCCTATC TGGGGACAGC AGAGGCCCCT AGGTGCGGGC CGTTGCAGTT TTTTGATGAG
  CTGCACACAT ATGGATACCC GAACATCTGG AGCGGCCATG TGCTGCTTGG GGCAGGCCAG
  CCCTGGTGAG CCAATCCAGG GGCCCCGGGG TGCCGGGAGG CAGCAGGGCC CAGCCAGTGA
  R
  CGCGGATAAA TTATTCATGA ACGAGTTATT TGTGGTGCAA GGGGTTCATC AGCTACTTTG
  ATTAAAAGTC CAACGAGTAA TGAATATGCA AACGCCAGCG ACTGCTCCAA GCAACAGATT
  TGTCAAATTG TCTGTACTTC ACCGAGATAA AGGAAAACCT CCCGGGGTCC CGAAATTGAA
  AAACCGCACC GTCAAGTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718136	NES11297801	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32820674					SNP	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718136	NES11297801	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61417392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	195 bp distal
Rr680558	regulatory region 680558	377 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	377 bp downstream