rs32820676 SNP Detail

Summary

• ID
  rs32820676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61417395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCCTCCA ACTCCAGATG
  GCCTATCTGG GGACAGCAGA GGCCCCTAGG TGCGGGCCGT TGCAGTTTTT TGATGAGCTG
  CACACATATG GATACCCGAA CATCTGGAGC GGCCATGTGC TGCTTGGGGC AGGCCAGCCC
  TGGTGAGCCA ATCCAGGGGC CCCGGGGTGC CGGGAGGCAG CAGGGCCCAG CCAGTGAGCG
  Y
  GGATAAATTA TTCATGAACG AGTTATTTGT GGTGCAAGGG GTTCATCAGC TACTTTGATT
  AAAAGTCCAA CGAGTAATGA ATATGCAAAC GCCAGCGACT GCTCCAAGCA ACAGATTTGT
  CAAATTGTCT GTACTTCACC GAGATAAAGG AAAACCTCCC GGGGTCCCGA AATTGAAAAA
  CCGCACCGTC AAGTCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718138	NES11297802	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32820676					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718138	NES11297802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61417395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	198 bp distal
Rr680558	regulatory region 680558	380 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	380 bp downstream