rs32820678 SNP Detail

Summary

• ID
  rs32820678
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61418293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATTTGG CTCAGAGCCT
  TGAGGGTCTC AGTGGATGAA GAGACTCCAA GCTGTTCCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGCA TCCCCAGGGA GTCAGCTGTC ACATAGCAGG
  S
  TGATCGTGAG CTAGGTAATG TGAGTGCCTG AGATACTTTA TATGCCTTTC TTGCTGGTCT
  GGGCCTGTGG AGCAGACATG CAGTCAAGGA TGGTGGGAAA GGCTAGAAGG TGCCATAGGT
  CTTTTGCTCA AGAAAGCTGG GGCTCAGCTT TCTCAGACCC CCAAGATGTT TAAAAACTCT
  GAGCAGCACT GAGTTGTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718140	NES11297679	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32820678					SNP	C	C	G	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718140	NES11297679	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61418293 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	1096 bp distal
Rr680558	regulatory region 680558	1278 bp distal
Rr680559	regulatory region 680559	within coordinates
Tssr85515	transcription start site region 85515	1278 bp downstream