rs32820944 SNP Detail

Summary

• ID
  rs32820944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129470097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GTCTGGGGCT CCTGGGTTCG
  Y
  TGTGAATCAT TGCATAACAT GGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45198847	mCV24478129	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147588675	ENSMUSSNP6064530	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320505287	CHEV_2_129453913	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32820944					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129470097 () rs orientation: forward

Symbol	Name	Function Class
Rr564960	regulatory region 564960	1940 bp distal
Rr564961	regulatory region 564961	901 bp distal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1804 bp upstream
Tssr20163	transcription start site region 20163	1824 bp upstream
Tssr20164	transcription start site region 20164	1885 bp upstream
Tssr20165	transcription start site region 20165	1915 bp upstream
Tssr20166	transcription start site region 20166	1934 bp upstream
Tssr26273	transcription start site region 26273	1805 bp downstream
Tssr26274	transcription start site region 26274	1865 bp downstream