rs32822177 SNP Detail

Summary

• ID
  rs32822177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121976554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA TTTGAGACAA GGCCTTATGG
  R
  ACTGTCCAGA CTGGCCTGGA CCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45199190	mCV24434376	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147409977	ENSMUSSNP3798001	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320487199	CHEV_2_121971809	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32822177					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121976554 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	1614 bp upstream
Cpgi12169	CpG island 12169	1519 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	1355 bp upstream
Rr563912	regulatory region 563912	1123 bp proximal
Rr563913	regulatory region 563913	1624 bp proximal
Tssr19804	transcription start site region 19804	1402 bp upstream
Tssr19805	transcription start site region 19805	1607 bp upstream
Tssr19806	transcription start site region 19806	1649 bp upstream
Tssr25953	transcription start site region 25953	881 bp downstream
Tssr25954	transcription start site region 25954	1429 bp downstream