rs32822411 SNP Detail

Summary

• ID
  rs32822411
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117013096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACGACGC AGTCGGGAGT GTGCAGCATA CCCAGGTGTC
  ATCATCCGCG TGCGGCCCGG CCCGCGGCAG CCATGTTGGC CCGCTCGCAG CCCGGAGCCC
  S
  GGAGGCGGCC GCAGCGATCT CCACAGCCCT AGCCCACCGC AGGCCCTTGC CACGGCTGCC
  CGTGGCCCAT GGTCGGGCCG AGCATGCGTC GGGAGGCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45699136	mCV22659071	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss147285270	ENSMUSSNP5806433	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32822411					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117013096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1737 bp upstream
Gm26330	predicted gene, 26330	610 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	1387 bp downstream
Rr398411	regulatory region 398411	20 bp upstream
Rr598069	regulatory region 598069	334 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	1325 bp upstream
Snord55	small nucleolar RNA, C/D box 55	51 bp upstream
Tssr42956	transcription start site region 42956	51 bp upstream
Tssr42957	transcription start site region 42957	176 bp downstream
Tssr42958	transcription start site region 42958	223 bp downstream
Tssr42959	transcription start site region 42959	245 bp downstream
Tssr42960	transcription start site region 42960	286 bp downstream
Tssr42961	transcription start site region 42961	300 bp downstream