rs32823438 SNP Detail

Summary

• ID
  rs32823438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCATGTTT AATATTTTTT
  AATAATTGTA AGGTTGATTT AGCCCTCCCC TCTCCATATT AGTGTGGATT GTGAACAAAA
  TATACACTAA TGAGCTCAGT GCTCAGTAAT AAGGTAGTTG GTGTTTTAGT CATTTTATTG
  TATAAAATCC AAAACTCAGG TCCCTTGAAA GGGTAGCACA GAGACAGAAA GAGGGAGGGA
  R
  AGATAGACAG ACAGAAAGAA GCAAATGTTT AAAGTATCAG TCCTAAACAA ACAAACAAAC
  AAACAAAAAA CAAAAAATGA AACAAAACAA AACCAGGGAC AGCCTGAGCA TTGATTAAAA
  AGTCGAGTGT TCTCTGCAGG AACAGTTCTG ACTGCTTTCC TAGGAGCCCC TATCCCCTCC
  CAGGACACAC ACTGCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48216989	NES11779505	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32823438					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216989	NES11779505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400782 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	12 bp distal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1888 bp downstream
Saa2	serum amyloid A 2	475 bp upstream
Tssr66700	transcription start site region 66700	474 bp upstream
Tssr66701	transcription start site region 66701	995 bp upstream