rs32823442 SNP Detail

Summary

• ID
  rs32823442
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAATCC AAAACTCAGG
  TCCCTTGAAA GGGTAGCACA GAGACAGAAA GAGGGAGGGA GAGATAGACA GACAGAAAGA
  AGCAAATGTT TAAAGTATCA GTCCTAAACA AACAAACAAA CAAACAAAAA ACAAAAAATG
  AAACAAAACA AAACCAGGGA CAGCCTGAGC ATTGATTAAA AAGTCGAGTG TTCTCTGCAG
  K
  AACAGTTCTG ACTGCTTTCC TAGGAGCCCC TATCCCCTCC CAGGACACAC ACTGCCTTCC
  TCTTGGCACC CTCTCTCCCC TCACTGTTGA CCCCAGGCTA CTACACCCCA GAAGATTGCC
  ACCGCACAGA AAATTGTCTC CTGTGCTCCC ATTGCACAAT GAGGGAAAAT GACCTGTGGA
  TAAAGAGCTC ACAGGACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48216995	NES11779514	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32823442					SNP	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216995	NES11779514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400922 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	152 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	335 bp upstream
Tssr66700	transcription start site region 66700	334 bp upstream
Tssr66701	transcription start site region 66701	855 bp upstream
Tssr66702	transcription start site region 66702	1918 bp upstream
Tssr66703	transcription start site region 66703	1941 bp upstream
Tssr66704	transcription start site region 66704	1996 bp upstream