rs32824395 SNP Detail

Summary

• ID
  rs32824395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46401056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAC AAAACAAAAC
  CAGGGACAGC CTGAGCATTG ATTAAAAAGT CGAGTGTTCT CTGCAGGAAC AGTTCTGACT
  GCTTTCCTAG GAGCCCCTAT CCCCTCCCAG GACACACACT GCCTTCCTCT TGGCACCCTC
  TCTCCCCTCA CTGTTGACCC CAGGCTACTA CACCCCAGAA GATTGCCACC GCACAGAAAA
  Y
  TGTCTCCTGT GCTCCCATTG CACAATGAGG GAAAATGACC TGTGGATAAA GAGCTCACAG
  GACACCGGGA AGATTTCTGT CACAGTCTTT ACAAGAAATG ACTTGTCTGG AGTATTACCA
  AGGGTGGTGC CAGGCTGTCC TTGCCCCTCA CCTGAGCAGG GAGGCTCAGC ATAAATGCCT
  GCCTCCTCTC ACCTACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48216999	NES11779517	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	C	T	T	T	C	T	C	C	C
ss149179913	ENSMUSSNP5054119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32824395					SNP	C	T	T	T	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48216999	NES11779517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46401056 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	286 bp distal
Gm74180	predicted gene, 74180	within coordinates
Saa2	serum amyloid A 2	201 bp upstream
Tssr66700	transcription start site region 66700	200 bp upstream
Tssr66701	transcription start site region 66701	721 bp upstream
Tssr66702	transcription start site region 66702	1784 bp upstream
Tssr66703	transcription start site region 66703	1807 bp upstream
Tssr66704	transcription start site region 66704	1862 bp upstream