rs32825643 SNP Detail

Summary

• ID
  rs32825643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61415646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTGCCC AACATGGGTC
  TTCCTATTTC TGTAACTGGT CAAGATATGT GTGGCTTCAG CTCTCTCCAG TGAATGCCTC
  ACACACACTT CAGTGAGAAC CTCTAAGCCC AAGGTCAACA GGGAGATGGG AGATCTGAGA
  CTGGCGACCT GAGCTGGAAG GAGTGGGGGT GGGGCAGCAA TCCCAGATGG TAAGCCCCAC
  Y
  TTCTGCAGTC CAACATGTGT CTGTTTATCC AAAGCCCAGT GTTCAGAGGG TCACATGACT
  GAAGTCCACC TTTGTCAGAT CAGTCTCCAG GGCAAGGGAC AGTTCTTGAC CTCAGAATCT
  TCAAGTAGAA GTGGCCCCTG TATGATATGG TGTGGTATGG ACCTGGGTGC TTAACCCATC
  ACCCCTGTAC CTGTACCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47718116	NES11297870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32825643					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47718116	NES11297870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61415646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21882	CpG island 21882	1298 bp proximal
Rr680558	regulatory region 680558	869 bp proximal
Rr680559	regulatory region 680559	1370 bp proximal
Tssr85515	transcription start site region 85515	1349 bp upstream