rs32826030 SNP Detail

Summary

• ID
  rs32826030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133694049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG TGGTTCCCAG TATCAGGTAA
  R
  GATCAGGAAA TAGACGCATA CACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45699940	mCV22578597	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147513064	ENSMUSSNP6950941	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss321344249	CHEV_4_133522653	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32826030					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133694049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15020	CpG island 15020			154 bp proximal
Hmgn2	high mobility group nucleosomal binding domain 2			Intron
				Noncoding-Transcript-Variant
Rr398563	regulatory region 398563			393 bp upstream
Rr601512	regulatory region 601512			693 bp proximal
Rr601513	regulatory region 601513			1902 bp proximal
Tssr39509	transcription start site region 39509			1411 bp upstream
Tssr43836	transcription start site region 43836			456 bp downstream
Tssr43837	transcription start site region 43837			497 bp downstream
Tssr43838	transcription start site region 43838			558 bp downstream
Tssr43839	transcription start site region 43839			1186 bp downstream
Tssr43840	transcription start site region 43840			1215 bp downstream
Tssr43841	transcription start site region 43841			1376 bp downstream
Tssr43842	transcription start site region 43842			1873 bp downstream