rs32826112 SNP Detail

Summary

• ID
  rs32826112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59737726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTATGAGA GGAATCCGAT
  CACAAATGGA TGGCTTGATT CCTGGGGTAG AACCACGTGA GATGGCAGCC ATGTGTCTTG
  GATTGGCCCA CAGGTAAGTA CAGAAGTTAA ATGTATGCTT ACTCATATAC ATACACATAT
  TTATATACAT CTGTCCTAAA AGTGTGTAAG TATTAATGTC AGGGAGATGC TGCTGTTGCC
  Y
  TCAAGAAAAA ACTTGCTCAG CATCAATAAA GCTGATAAGT GGTAAAAATA CAATTATTAG
  ACCCAGTGTA TTCTTTTTGG TTTTTCCAGG CAGGATTTGT CTGTATAGCT CTGGCTGTCC
  TGGAACTCGG TCTATAGACC AGGCTGGTCT TGAATTCAAA GATCCAACTG CCTCTGCTTC
  CGAGGTGCTG GGATTAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49404791	NES12786474	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C		C	C	T	C
ss149144592	ENSMUSSNP5367388	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32826112					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49404791	NES12786474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59737726 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	453 bp distal
Tssr6887	transcription start site region 6887	492 bp downstream
Tssr11836	transcription start site region 11836	788 bp upstream