rs32826175 SNP Detail

Summary

• ID
  rs32826175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59703597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAAA ATATATAGAC
  ATCAATTAAT TCCATTTTAT TTCCTAATGA AGAAAGCCCA ACAAAATAAA ATCAAGCAAT
  TCTAATTCTT CAGTCTATTA TTAAAATGTA AAAACTGTCT GGGCAAGCTA GCTTGGTGGG
  CAATGGATCA AATTGAATGA AACAGAACCA AATATCTGGA ATAGAACCAA TCATATATAA
  Y
  TCACTTCAAA GTTTAAGTCA AACACTCAAG ATAGTTCATT ACATCAAGAT ACATCACATT
  ACAATATAAC CCTGAACTGT GACTTGACAC TAAATACCAC AGCTTATCAA GAACTAAAAA
  TTACAGGGAA AATCTGCTGC TAGTTGTATA AAAATACTGT TTTGGGCCTA GACTATAATA
  TCTCTATAAA GGCTAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49404885	NES12788943	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32826175					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49404885	NES12788943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59703597 () rs orientation: forward

Symbol	Name	Function Class
Rr22466	regulatory region 22466	within coordinates
Rr34074	regulatory region 34074	1804 bp proximal
Rr371358	regulatory region 371358	253 bp downstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	1997 bp upstream