rs32826179 SNP Detail

Summary

• ID
  rs32826179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59702189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACAAAGA GTTCTGAGCT
  CAACTCCCAG CACTAAGCTA GCAGTCACAA CAGCAATCAA ACAAACAAAC AAAAAAACTA
  ACTCATCCTG GATTCACAAC TATAACAATT ACCATATTGA CTCATCTGAC TATAACAAAC
  ATTATTTGTT TAGATTATCT CTGGCTTCTC TTTCTTATAT TTTCTCCTTA GCCATTCATC
  R
  TTGTGACAAT TTTCAGTGGC TCTGAAGTCC ATCTTATTCT CTATAATCAC TGAGCCACTA
  TAAGAATAAA CATCTCTACC ACTTGTGCAA CAGCCTTAGT GCAGTCATGA ACCTTTTCTT
  AGCCAGGCCT TTAATCCCAT CATTCAGGCT GATTTCTGTA ATTTGAAGCT AGCCCTGCTA
  GGCCAGCTAA GGCTACAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49404889	NES12789008	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32826179					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49404889	NES12789008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59702189 () rs orientation: forward

Symbol	Name	Function Class
Gm71026	predicted gene, 71026	1492 bp downstream
Rr16806	regulatory region 16806	1389 bp distal
Rr22466	regulatory region 22466	1212 bp proximal
Rr27302	regulatory region 27302	1782 bp distal
Rr371358	regulatory region 371358	473 bp upstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	589 bp upstream