rs32826745 SNP Detail

Summary

• ID
  rs32826745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59699819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGTCTA ATACTGAAAT
  GCCTTCTCAG AGCCAGAGCC CTCTCCCAAC CACCATCTTC CTTTAATTCT TCTACTTGCA
  ACTCATACAT ACCCTGCATG GAAATTATTT ACCTTCTTTA CCTCACTTCT CTGCTGTTAT
  CCTTATTTTT CCATTATTGT CAAAACTTCA CAAGTCAGTA TTTGCTATGA GAACTTTACT
  Y
  TCTACTAGCT GTAATCTGGG GTATGCATCA ACATTCCATT CAACACTGCC CTCACAGTTC
  CAGCTGGACT GCTTACTGCT AAACCCAAAG AACACTCAAA TTTCTCCATC TCAGCCTTCC
  AATACTCATT GACTTCTCAT TCAGTTTCTT TAAATGCTGG CCTGCGGGCT GGAGAGATGG
  CTCAGAGGTT AAGAGCACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49404895	NES12789105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32826745					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49404895	NES12789105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59699819 () rs orientation: forward

Symbol	Name	Function Class
Gm71026	predicted gene, 71026	511 bp upstream
Rr16805	regulatory region 16805	1619 bp distal
Rr16806	regulatory region 16806	582 bp proximal
Rr22465	regulatory region 22465	619 bp distal
Rr27302	regulatory region 27302	348 bp proximal
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	1779 bp downstream