rs32827257 SNP Detail

Summary

• ID
  rs32827257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59736645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTGAAG ATAACGACAG
  TGTACTCATA TATATAAAAT AAATCTTTTC TTTAAAAAAA AATCACATAG GTACATGTGC
  AGATTTTAAA AGTCTGGAAA TCAAATAAAA TAGCAGTAGT CCACTTAGTC CAACAAGCAA
  GAAAAAAACT TCCTCAGATT TAATAATGCT TTGCATCTTG GGATGCAGCC TAGCCAAAAG
  R
  GTAATTGGAA GGTTTCTCTA TTTAATTTCC ATCAACTTCT TAACAAACAT ACTAGAAGCA
  AACACTATGT ACAGTTGAGA AAAGTATATA TATTATACCC GAGATCAATA TTGTTTTAAA
  ATACCAGATT CCAATGAGAT AGATCATGCT TATCTGTTCT ATCCCGGCCT GTGGCTTACA
  AGGACCAGGT ACACCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49404797	NES12786556	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32827257					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49404797	NES12786556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59736645 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	176 bp proximal
Tssr6887	transcription start site region 6887	574 bp upstream
Tssr11836	transcription start site region 11836	259 bp downstream