rs32827490 SNP Detail

Summary

• ID
  rs32827490
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70169083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA ACGTCTAGAC CACAGCGCAG
  W
  GAACACAGCA GTCATAAGTG CGACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46197013	mCV24416463	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss145111281	ENSMUSSNP3783954	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
ss322696647	CHEV_8_72240332	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32827490					SNP	T	T	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70169083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm51532	predicted gene, 51532			719 bp upstream
Gm64048	predicted gene, 64048			125 bp upstream
Rr400882	regulatory region 400882			within coordinates
Rr400883	regulatory region 400883			432 bp upstream
Rr664553	regulatory region 664553			within coordinates
Rr664554	regulatory region 664554			136 bp proximal
Rr664555	regulatory region 664555			381 bp proximal
Tssr77669	transcription start site region 77669			147 bp upstream
Tssr81531	transcription start site region 81531			9 bp upstream
Tssr81532	transcription start site region 81532			4 bp downstream
Tssr81533	transcription start site region 81533			394 bp downstream
Tssr81534	transcription start site region 81534			417 bp downstream
Zfp869	zinc finger protein 869			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant