rs32827799 SNP Detail

Summary

• ID
  rs32827799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185417064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGTACTCA CAGCCATGGT CTTCAGAAAA CATACCGCCC
  CCTGCTGGGA GTAGGCGGCT CTACAGGCCT GGCCAGCTGA AGATCTGAGC AGCTGAAAGA
  Y
  TTCCTCTAGG TCCATGTTTG TCCATCGACA GCTAATTGGA TCTGTCTAAG TGGATTGTGG
  TCAGACCAGG ATTATTTTTA ATCAGGTACG AACACAATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46734727	NES10660964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T		C	T		T
ss146440091	ENSMUSSNP6786531	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
ss320178640	CHEV_1_187508746	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32827799					SNP	C	C	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46734727	NES10660964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185417064 () rs orientation: forward

Symbol	Name	Function Class
Rr425422	regulatory region 425422	48 bp distal
Rr425423	regulatory region 425423	119 bp proximal