rs32827954 SNP Detail

Summary

• ID
  rs32827954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36499547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGACTT TACCTAATCC
  AAATTCGTTC TCCAAGTCTC CACTCCCAGG CGGCACCGAC ACAAGACTTT GAGGATTGAA
  TTGCCAGCAC ATGAATTCAA GGAGACGCAC CCAAACCATA GCCCCAGGAA GGACTGTACA
  GCCAAGAATT TCAATTAGGA TAGAAAGTGG ATCTAATTCA ATGCTCTAGT GTAAAAGCCC
  Y
  ATAGGCTCAG CAATCCCAGC CACTCACTGC AGGCTCTCCA AGGAGCTTTT GTGGTGGCAA
  GCATTTAGAT AAACTTGAAA TCTGGACACC TGGGACTGAA GATCTCATGT TCTGATTTCT
  GAGTGGGGCA GGGACACAAT CAGAACTTGC CTTATTGATT TGCCCAAGGT GATAGATTGC
  CACATGTGGA TTGTGGCGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47219234	NES11101104	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss148927323	ENSMUSSNP2137582	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T										C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32827954					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47219234	NES11101104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36499547 () rs orientation: forward

Symbol	Name	Function Class
Gm33401	predicted gene, 33401	1512 bp upstream
Tssr6266	transcription start site region 6266	1530 bp upstream